.. _atlas-based-analysis:

Atlas-based analysis
####################

This tutorial covers how to use the PAM50 gray and white matter atlas to compute metrics across individual gray matter regions and and white matter tracts.

.. toctree::
   :maxdepth: 1

   atlas-based-analysis/before-starting
   atlas-based-analysis/gm-wm-atlas
   atlas-based-analysis/partial-volume-effect
   atlas-based-analysis/overcoming-the-partial-volume-effect
   atlas-based-analysis/warping-atlas-to-mt-space
   atlas-based-analysis/extract-mtr-in-wm
   atlas-based-analysis/extract-mtr-in-specific-tracts
   atlas-based-analysis/adding-custom-tracts