Applying the gray matter segmentation algorithm ############################################### ``sct_deepseg_gm`` can be applied to T2* data using the following command: .. code:: sct_deepseg_gm -i t2s.nii.gz -qc ~/qc_singleSubj :Input arguments: - ``-i`` : Destination image the template will be warped to. - ``-qc`` : Directory for Quality Control reporting. QC reports allow us to evaluate the results slice-by-slice. :Output: - ``t2s_gmseg.nii.gz`` : The image file containing the gray matter segmentation. .. figure:: https://raw.githubusercontent.com/spinalcordtoolbox/doc-figures/master/gm-wm-segmentation/io-sct_deepseg_gm.png :align: center