One of the main applications of SCT is building image analysis pipelines using SCT’s Command-Line Tools. To provide examples of this, the SCT team maintains the SCT Pipeline GitHub organization, which contains analysis pipelines used in NeuroPoly-affiliated research projects. These SCT Pipeline projects demonstrate how SCT’s command-line tools can be successfully applied to real-world MRI imaging data, and cover areas such as:
Metric analysis (DTI, MSDKI) of pediatric (neonatal) spinal cord diffusion MRI data
Computation of normative qMRI metrics in specific spinal pathways
Feel free to use, share and contribute on this organization!