Before starting this tutorial#

  1. Make sure that you have the following files in your working directory:

    • multi_subject/data/ : A folder containing 3 subjects, with 6 T2 and MT data files per subject.

    • multi_subject/process_data.sh : A script containing SCT commands to process T2 and MT data.

    • multi_subject/config.yml : A config file containing input arguments for sct_run_batch.

    You can get these files by downloading data_batch-processing-of-subjects.zip.

  2. Open a terminal and navigate to the multi_subject/ directory:

cd {PATH_TO_DOWNLOADED_DATA}/multi_subject