Before starting this tutorial¶
Make sure that you have the following files in your working directory:
single_subject/data/t2s/t2s.nii.gz: A T2* anatomical image of the spinal region.
single_subject/data/t2s/t2s_wmseg.nii.gz: A binary mask for the white matter segmentation of the spinal cord.
single_subject/data/t2s/t2s_gmseg.nii.gz: A binary mask for the gray matter segmentation of the spinal cord.
You can get these files by downloading data_gm-wm-metric-computation.zip.
Open a terminal and navigate to the