Before starting this tutorial¶
Make sure that you have the following files in your working directory:
single_subject/data/t2/t2.nii.gz: An anatomical spinal cord scan in the T2 contrast.
single_subject/data/t2/t2_seg.nii.gz: A 3D binary mask for the spinal cord.
You can get these files by downloading data_vertebral-labeling.zip.
Open a terminal and navigate to the