FSLeyes Integration

FSLeyes is part of the larger FSL package, which is a library containing tools for FMRI, MRI, and DTI brain imaging data. FSLeyes is the image viewer for this package, and can be installed as either part of the FSL package, or as a standalone app. See Integration with FSLeyes for instructions on how to install.

SCT + FSLeyes

SCT has a plugin script that can be used with the FSLeyes interface (GUI).

To enable the SCT plugin:

  1. Open FSLeyes application.

  2. File -> Run script

  3. Select the script spinalcordtoolbox/contrib/fsl_integration/sct_plugin.py

You should see something like this appear in the FSLeyes interface:

SCT-FSLeyes Interface