sct_compute_mtr

Compute magnetization transfer ratio (MTR). Output is given in percentage.

usage: sct_compute_mtr -mt0 <float> -mt1 <float> [-thr THR] [-h] [-v <int>]
                       [-o <str>]

MANDATORY ARGUMENTS

-mt0

Image without MT pulse (MT0)

-mt1

Image with MT pulse (MT1)

OPTIONAL ARGUMENTS

-thr

Threshold to clip MTR output values in case of division by small number. This implies that the output image range will be [-thr, +thr]. Default: 100.

Default: 100

-v

Possible choices: 0, 1, 2

Verbosity. 0: Display only errors/warnings, 1: Errors/warnings + info messages, 2: Debug mode

Default: 1

-o

Path to output file.

Default: “./mtr.nii.gz”