Before starting this tutorialΒΆ

  1. Make sure that you have the following files in your working directory:

    • single_subject/data/t2_lesion/t2.nii.gz: A T2w anatomical image with fake lesion (because of the difficulty to share patient data).

    You can get these files by downloading data_lesion-analysis.zip.

  2. Open a terminal and navigate to the single_subject/data/t2_lesion/ directory:

cd {PATH_TO_DOWNLOADED_DATA}/single_subject/data/t2_lesion/