sct_deepseg: Other specialized models

The sct_deepseg script also provides access to specialized models that focus on tasks outside of basic spinal cord segmentation. In recent versions, new models for the segmentation of spinal tumors, human multi-class SC & GM at 7T, MS lesion segmentation on MP2RAGE, mouse SC, etc. have been added.

Sample models. (Tumor segmentation: Lemay et al. NeuroImage Clinical (2021), WM/GM cord segmentation at 7T: Laines Medina et al. arXiv (2021), MP2RAGE SC and lesion segmentation: Cohen-Adad et al. Zenodo release (2023))

You can learn more about all of the available models by:

• Running sct_deepseg -h to view a basic summary

• Running sct_deepseg -task-details to view detailed descriptions of each model.

• Visiting the visual gallery of models by going to the sct_deepseg page.