Before starting this tutorialΒΆ
Make sure that you have the following files in your working directory:
multi_subject/data/
: A folder containing 3 subjects, with 6 T2 and MT data files per subject.multi_subject/process_data.sh
: A script containing SCT commands to process T2 and MT data.multi_subject/config.yml
: A config file containing input arguments for sct_run_batch.
You can get these files by downloading data_batch-processing-of-subjects.zip.
Open a terminal and navigate to the
multi_subject/
directory:
cd {PATH_TO_DOWNLOADED_DATA}/multi_subject