Atlas-based analysis

This tutorial covers how to use the PAM50 gray and white matter atlas to compute metrics across individual gray matter regions and and white matter tracts.

• Before starting this tutorial
• Atlas-based analysis
• The partial volume effect
• Overcoming the partial volume effect
• Transforming the GM/WM atlas to the MT space using warping fields
• Using the atlas to extract MTR in white matter
• Using the atlas to extract MTR from specific white matter tracts
• Modifying info_label.txt to add custom tracts to your analysis