Before starting this tutorial#

  1. Make sure that you have the following files in your working directory:

    • single_subject/data/mt/mt0.nii.gz: The image without the magnetization transfer pulse.

    • single_subject/data/mt/mt1.nii.gz: The image with the magnetization transfer pulse.

    You can get these files by downloading data_mtr-computation.zip.

  2. Open a terminal and navigate to the single_subject/data/mt/ directory:

cd {PATH_TO_DOWNLOADED_DATA}/single_subject/data/mt/