Before starting this tutorialΒΆ

  1. Make sure that you have the following files in your working directory:

    • single_subject/data/t2_compression/t2_compression.nii.gz: A 3D binary mask for the spinal cord of a T2w anatomical image with spinal cord compression.

    You can get these files by downloading

  2. Open a terminal and navigate to the single_subject/data/t2_compression/ directory:

cd {PATH_TO_DOWNLOADED_DATA}/single_subject/data/t2_compression/