Segmenting the gray and white matter for T2* data

This tutorial demonstrates how to segment the gray and white matter using the sct_deepseg_gm tool.

Gray matter segmentation can be used to compute metrics such as cross-sectional area (CSA) of the gray matter. It can also be used to refine the template registration by accounting for the spinal cord gray matter shape.

• Before starting this tutorial
• Gray matter segmentation algorithm: sct_deepseg_gm
• Applying the gray matter segmentation algorithm
• Computing the white matter segmentation