Before starting this tutorial¶
Make sure that you have the following files in your working directory:
single_subject/data/mt/mt1.nii.gz: The magnetization transfer image with the off-resonance RF pulse applied.
single_subject/data/t2/warp_template2anat.nii.gz: The warping field that defines the transformation from the PAM50 template to the T2 anatomical space.
You can get these files by downloading data_coregistration.zip.
Open a terminal and navigate to the