Specialized segmentation models:
sct_deepseg script is separate from
sct_deepseg_sc, and provides access to specialized models created by the ivadomed project (https://ivadomed.org). These specialized models focus on tasks outside of basic spinal cord segmentation. In recent versions, new models for the segmentation of spinal tumors, human multi-class SC & GM at 7T, MS lesion segmentation on MP2RAGE, mouse SC, etc. have been added.
You can list the available tasks by running
sct_deepseg -h, or you view detailed descriptions of each task by running